Appendix

Dr. Myers had more to say about the recent research reports concerning the vestigial (or non-vestigial) nature of the appendix. In part one, Myers made it clear that the reporting on the research was misleading and unnecessarily derisive to Darwin and his work. In part 2, Dr. Myers tackles the meat of the research itself, and has some fascinating descriptions of the digestive system to share:

The interesting thing about the transition is that it makes a couple of other odd dead-ends. The cecum (pink) is a small pouch that goes nowhere, while the appendix (red) is a slender projection from the cecum. These are variable in size both within a species and between them — some humans are born without an appendix, and within the majority that have them, there's at least a two-fold variation in size. Between species, the variation is even greater: most mammals don't have an appendix at all, and some have huge ceca and appendixes. The enlarged cecum in most of these species is used as a fermentation chamber, in which hard-to-digest food resides while resident bacteria help break it down....

The cecum is an entirely new concept to me, being a non-professional science geek with little knowledge of the digestive pathways. I find it fascinating that this vital part of our gut has only rarely been featured in the sources I've read (many of which do make points about the appendix and intestines). More from Myers:

If the appendixes in marsupials and euarchontoglires are actually homologous, that should imply that their last common ancestor had a cecum/appendix…and the pattern is explained by widespread and frequent loss of the organ. The authors acknowledge this idea, but admit that there's also a problem with analyzing it: it depends on loss being far more likely than gain, and there aren't any probabilities that we can assign to such events. Fair enough. It does mean, though, that this analysis is insufficient to come up with an answer.

What I'd like to see is patterns of gene expression. That region in the plumbing where the small intestine becomes the large intestine is an interesting transitional zone which must be defined by some kind of patterning molecules; furthermore, I'd expect some kind of gene regulatory network has to be at work in that area to specify the different regions of small intestine, cecum, appendix, and large intestine. What are those genes? Which ones are expressed in the different regions? How do they interact and how are they regulated? You can see how my brain is turning over: I want to know about the developmental and molecular events going on here. That's where we'll be able to resolve the questions of appendix evolution.

I'm also unconvinced by the argument that retention of a feature for 80 million years is necessarily evidence of selection for a specific function. Another possibility is that it is entirely structural: there is a patterning pathway that sets up the transition from small to large intestine, and as a side effect it defines a few intermediate zones, the cecum and appendix. These are mostly harmless, and so are retained as entirely neutral characters that are not easily pared out without disrupting gut function. I say mostly harmless, because one lesson of the phylogeny is that a lot of lineages seem to have edited the structure out altogether. Again, it could just be loss of a neutral character, but it could also be an indication that usually, the appendix is a detriment.

A more solid answer would emerge if, for instance, the molecular networks behind the formation of the appendix in monotremes and humans were compared, and found to use the same toolkit of genes — then we'd have to regard it as highly probable that they are homologous, and the last common ancestor had an appendix. Or conversely, if the mechanisms used by the afrotheria, the xenarthra, and the other mammalian groups that lack an appendix to switch off appendix development were identical, that would suggest that the last common ancestor of the eutheria had that mechanism, lacked an appendix, and those euarchontoglires definitely did re-evolve the appendix.

Show me trees built from genes, then maybe I'll accept the interpretation with more confidence! I just think that one thing these data do show us is that the appendix is a remarkably labile organ, making the appearance or absence suggestive but not conclusive.

As for the argument that one function of the appendix that is significant in modern human populations is as a bacterial reservoir for recovery of gut flora after losses due to disease, that seems entirely reasonable. However, the fact that the appendix has an incidental function that can be useful to individuals in specific circumstances does not mean that the appendix isn't a vestigial organ, nor does it necessarily mean that its retention has been selected for. That some modern human populations have significant mortality from diarrheal symptoms (from cholera, for instance) seems to me to be a relatively trivial factor in a study that shows persistence of the appendix over many tens of millions of years, especially when no evidence of differential survival by individuals having or lacking an appendix is known.

As I posted a few days ago, a group of researchers has made some interesting claims regarding the appendix.

Not only does the appendix have functionality (namely, it provides a reservoir for healthy bacteria to hide out during digestive or intestinal issues such as diarrhea), the researchers have determined that the appendix has evolved at least two seperate times and has only recently (for humans) developed problems such as severe inflammation.

A great deal of the article references Charles Darwin and his misconceptions about the appendix. PZ Myers, never one to miss an opportunity to set the record straight, has weighed in over the weekend on the way Darwin was used throughout various articles in highlighting the research:

Charles Darwin is dead. Your research can't be very cogent if your approach to drum up interest is to dig up a 120-year-old corpse and kick it around; is there anyone alive who disagrees with you who can put up a more informative and entertaining struggle? What this does is pick this one fellow as a symbol of the whole edifice of evolutionary theory, which has the advantage of making one's work seem very, very important (even if one is stacking the deck to do it), but has the disadvantage of giving every creationist on the planet something to masturbate over, and they're icky enough without your help.

It's also annoying. Charles Darwin was wrong about many things — I'll even give an example at the end of this article — and it's part of the nature of science that everyone's work will be revised and refined over time, and some of us will even be shown to be completely wrong. It's rather unseemly to collect a lot of data that Darwin did not have, run it through PAUP 4.0 on a fast computer, map the data onto a molecular consensus phylogeny, and cackle gleefully over discovering something Darwin did not know. Really, it doesn't make you a better scientist than Darwin.

To make it even worse, people who do this can't even make the corpse-fight a fair fight — they have to stuff the pathetic dead body with straw. In this case, they're padding Darwin's investment in the appendix a fair amount. They cite one work by Darwin, The Descent of Man, which mentions this issue. He wrote one whole paragraph on the topic, and here it is, in its entirety; it was presented briefly as part of a long list of human rudimentary structures, such as wisdom teeth, muscles of the ear, and the semilunar fold of the eye.

With respect to the alimentary canal, I have met with an account of only a single rudiment, namely the vermiform appendage of the caecum. The caecum is a branch or diverticulum of the intestine, ending in a cul-de-sac, and is extremely long in many of the lower vegetable-feeding mammals. In the marsupial koala it is actually more than thrice as long as the whole body. (46. Owen, 'Anatomy of Vertebrates,' vol. iii. pp. 416, 434, 441.) It is sometimes produced into a long gradually-tapering point, and is sometimes constricted in parts. It appears as if, in consequence of changed diet or habits, the caecum had become much shortened in various animals, the vermiform appendage being left as a rudiment of the shortened part. That this appendage is a rudiment, we may infer from its small size, and from the evidence which Prof. Canestrini (47. 'Annuario della Soc. d. Nat.' Modena, 1867, p. 94.) has collected of its variability in man. It is occasionally quite absent, or again is largely developed. The passage is sometimes completely closed for half or two-thirds of its length, with the terminal part consisting of a flattened solid expansion. In the orang this appendage is long and convoluted: in man it arises from the end of the short caecum, and is commonly from four to five inches in length, being only about the third of an inch in diameter. Not only is it useless, but it is sometimes the cause of death, of which fact I have lately heard two instances: this is due to small hard bodies, such as seeds, entering the passage, and causing inflammation. (48. M. C. Martins ("De l'Unite Organique," in 'Revue des Deux Mondes,' June 15, 1862, p. 16) and Haeckel ('Generelle Morphologie,' B. ii. s. 278), have both remarked on the singular fact of this rudiment sometimes causing death.)

Note why Darwin classed this appendage as vestigial: because it is greatly reduced compared to the homologous organs in non-human relatives, and because it currently exhibits a great range of variation, which is apparently non-functional. These are criteria which the paper in question does not refute at all. Darwin does say that the appendix is "useless", and the paper will show some evidence that that is wrong. It's also irrelevant.

The reason why it is irrelevant is that the presence of some function is not part of the definition of a vestigial or rudimentary organ — Darwin obligingly concedes that evolution will salvage some utility out of organs with little retention of their original function, but which are present as a consequence of contingency....

If a portion of the gut, a digestive organ, is diminished in size such that it no longer contributes to the primary function of the organ, but does retain a secondary function, such as assisting in immunity, or as the authors of the recent paper will argue, in acting as a reservoir of bacteria for recolonizing the gut, then it is still a vestigial organ. It has lost much of its ancestral function.

I do not understand why this is so hard for so many people to comprehend. Biology is plastic and opportunistic. Accidents of history will always still be incorporated into the whole of the organism; we make do, or we die. Just because something is does not mean that the entirety of its nature is the product of selection.

Researchers from Duke, Arizona, and Arizona State have concluded that Charles Darwin was wrong.

No, not about natural selection or speciation.

He was wrong to believe that the human appendix was a vestigial organ with no modern function. Not only does the appendix have functionality (namely, it provides a reservoir for healthy bacteria to hide out during digestive or intestinal issues such as diarrhea), the researchers have determined that the appendix has evolved at least two seperate times and has only recently (for humans) developed problems such as severe inflammation.

The latest study demonstrates two major problems with that idea. First, several living species, including certain lemurs, several rodents and a type of flying squirrel, still have an appendix attached to a large cecum which is used in digestion. Second, Parker says the appendix is actually quite widespread in nature. "For example, when species are divided into groups called 'families', we find that more than 70 percent of all primate and rodent groups contain species with an appendix." Darwin had thought that appendices appeared in only a small handful of animals.

"Darwin simply didn't have access to the information we have," explains Parker. "If Darwin had been aware of the species that have an appendix attached to a large cecum, and if he had known about the widespread nature of the appendix, he probably would not have thought of the appendix as a vestige of evolution."

He also was not aware that appendicitis, or inflammation of the appendix, is not due to a faulty appendix, but rather due to cultural changes associated with industrialized society and improved sanitation. "Those changes left our immune systems with too little work and too much time their hands – a recipe for trouble," says Parker.

That notion wasn't proposed until the early 1900's, and "we didn't really have a good understanding of that principle until the mid 1980's," Parker said. "Even more importantly, Darwin had no way of knowing that the function of the appendix could be rendered obsolete by cultural changes that included widespread use of sewer systems and clean drinking water."